PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016434992.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 287aa    MW: 31626.9 Da    PI: 8.3146
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016434992.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025103125123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C++ Fs++  L  H++ H
  XP_016434992.1 103 FSCSFCKREFSTSQALGGHQNAH 125
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.2E-593129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.82E-6100130No hitNo description
PROSITE profilePS5015711.552103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDTFSMKKPC SSEASSISAA SEEIDTNTKK MKGKVMDLGS ELKTHELSSA GVLLDLKVHN  60
SASNLELNLF NSTSSMKNSA PASESSNEAM PNKQRRSSES RVFSCSFCKR EFSTSQALGG  120
HQNAHKQERA LAKRRNGLVD VVSPFGPPNY HPYYNPYSSY TTHLPFHGTF TSRSSLGVQG  180
DSSTIHKPSP YNPWSVFSGY NYRFNPEKWS SSGSSVLRTE NLGIGSAPLE NSLKFENKNS  240
AKGFCLRDSP VKIDNNRGGN NKRKVGFGEE DAEENEEDSE IDLNLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787489.10.0PREDICTED: zinc finger protein 4
RefseqXP_016434992.10.0PREDICTED: zinc finger protein 4-like
TrEMBLM1C3041e-113M1C304_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000586251e-112(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.13e-20zinc finger protein 3